Cardinal - A mass spectrometry imaging toolbox for statistical analysis
Implements statistical & computational tools for analyzing mass spectrometry imaging datasets, including methods for efficient pre-processing, spatial segmentation, and classification.
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softwareinfrastructureproteomicslipidomicsmassspectrometryimagingmassspectrometryimmunooncologynormalizationclusteringclassificationregression
10.18 score 82 stars 4 dependents 300 scripts 1.0k downloadsmatter - Out-of-core statistical computing and signal processing
Toolbox for larger-than-memory scientific computing and visualization, providing efficient out-of-core data structures using files or shared memory, for dense and sparse vectors, matrices, and arrays, with applications to nonuniformly sampled signals and images.
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infrastructuredatarepresentationdataimportdimensionreductionpreprocessingcpp
8.48 score 60 stars 4 dependents 794 downloadsCardinalWorkflows - Datasets and workflows for the Cardinal MSI
Datasets and workflows for Cardinal: DESI and MALDI examples including pig fetus, cardinal painting, and human RCC.
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experimentdatamassspectrometrydataimagingmassspectrometrydata
5.99 score 9 stars 12 scriptsCardinalIO - Read and write mass spectrometry imaging files
Fast and efficient reading and writing of mass spectrometry imaging data files. Supports imzML and Analyze 7.5 formats. Provides ontologies for mass spectrometry imaging.
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softwareinfrastructuredataimportmassspectrometryimagingmassspectrometrycpp
5.56 score 4 stars 3 dependents 470 downloadsCardinalWorkflows - Datasets and workflows for the Cardinal MSI
Datasets and workflows for Cardinal: DESI and MALDI examples including pig fetus, cardinal painting, and human RCC.
Last updated
experimentdatamassspectrometrydataimagingmassspectrometrydatadatapkg
4.48 score 8 scripts